Friends,
I have protein-rna complex. I opened xleap as follows
$AMBERHOME/exe/xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff99SB
Then i opened my pdb with loadpdb command. What i would like to know is that
in this case, will xleap automatically assign ff99 params to rna and ff99SB
to the protein. Or pricesely is this the correct way to use ff99SB + ff99
combination for protein and RNA.
Thanks,
Bala
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Received on Wed Aug 11 2010 - 09:00:05 PDT
