Re: [AMBER] error when compiling pmemd

From: Jason Swails <jason.swails.gmail.com>
Date: Mon, 9 Aug 2010 15:57:40 -0400

On Mon, Aug 9, 2010 at 12:20 PM, Jorgen Simonsen <jorgen589.gmail.com>wrote:

> Hi
>
> I fix it it was something with the path to mpi libraries but I get another
> error later on in the compilation
>
> ld: cannot find -lmpiif
>

If you are using mpif90 as the compiler and linker, remove all mpi libraries
from MPI_LIBRARY (or something like that) in the config.h file, since mpif90
implicitly takes care of those.

Good luck!
Jason


>
> during this I get the warning
>
> ifort: command line remark #10148: option '-tp' not supported
>
>
> can I ignore this one?
>
>
>
>
> On Mon, Aug 9, 2010 at 3:06 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
>
> > Hi Jorgen,
> >
> > > the error message is
> > >
> > > module gbl_constants_mod
> > >
> > > implicit none
> > >
> > > ! Global constants:
> > ...
> > > end module gbl_constants_mod
> > > make[1]: *** [gbl_constants.o] Error 1
> > > make[1]: Leaving directory `/home/Programs/amber10/src/pmemd/src'
> > > make: *** [install] Error 2
> >
> > This is an extremely weird error message since it is not actually an
> error
> > message it is simply echoing the file to the screen. I suspect there are
> > issues with your precompiler. Can you please post your config.h file
> along
> > with details of your system, gcc, cpp versions etc. Also please confirm
> > that
> > you can compile the rest of AMBER fine using your current login and
> > environment setup - try it again just to be sure.
> >
> > Also did you apply all of the bugfixes?
> >
> > All the best
> > Ross
> >
> > /\
> > \/
> > |\oss Walker
> >
> > ---------------------------------------------------------
> > | Assistant Research Professor |
> > | San Diego Supercomputer Center |
> > | Adjunct Assistant Professor |
> > | Dept. of Chemistry and Biochemistry |
> > | University of California San Diego |
> > | http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
> > | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> > ---------------------------------------------------------
> >
> > Note: Electronic Mail is not secure, has no guarantee of delivery, may
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> >
> >
> >
> >
> >
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-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Mon Aug 09 2010 - 13:00:05 PDT
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