Re: [AMBER] SASA over trajectory

From: Carlos Simmerling <carlos.simmerling.gmail.com>
Date: Mon, 9 Aug 2010 11:01:06 -0400

use imin=5, gbsa=1 or 2, and surften=1. the esurf will be the surface area,
extract it using something like grep/awk.



On Mon, Aug 9, 2010 at 10:58 AM, Beale, John <John.Beale.stlcop.edu> wrote:

>
> I need to determine the solvent accessible surface area of a protein with
> time over the course of a MD trajectory. Does anyone have a method for doing
> this?
>
> John
>
>
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Received on Mon Aug 09 2010 - 08:30:03 PDT
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