Yes. See the "strip" command. You can "strip" all atoms according to a
mask definition. This is well-documented in the manual (see ambmask for
mask syntax and the ptraj section for using "strip")
Good luck!
Jason
On Tue, Aug 3, 2010 at 6:29 PM, Jia Xu <xujia.ruc.gmail.com> wrote:
> Dear amber users,
> Is it possible to read a trajectory and dump the selected atoms(i. e.
> backbone atoms and ligand atoms) into a new trajectory?
> Thanks in advance!
> Regards,
> Jia
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Tue Aug 03 2010 - 17:30:03 PDT
