Dear All,
As mentioned in AmberTools users' manual, the parameters for ions in "ions08.lib" is better than "ions94.lib". Thus, I tried to generate topology file of poly(AT) in 1M KCl (as well as 1M NaCl) using "ions08.lib" and "frcmod.ionsjc_tip3p" obtained from AmberTools1.3. My question is that can I use these topology and coordinate files with SANDER in AMBER9?
Best,
Xioling
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Received on Sun Jul 25 2010 - 21:00:03 PDT
