[AMBER] MM-PBSA/MM-GBSA: mono valent salt

From: Xioling Chuang <xioling_c.hotmail.com>
Date: Sun, 25 Jul 2010 17:45:38 +0200

Dear All,

To calculate the energy components of complex, ligand and receptor using MM-PBSA (or MM-GBSA) by taking into account the salt effect (monovalent salt), in the "mm_pbsa.in" file how can we specify the type of ion, like NaCl, KCl, NaBr, etc.? What is the value of vdW radii of ions used in the calculation?

Best,

Xioling
                                               
_________________________________________________________________
Hotmail: Free, trusted and rich email service.
https://signup.live.com/signup.aspx?id=60969
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Jul 25 2010 - 09:00:03 PDT
Custom Search