Re: [AMBER] Relax command for tleap

From: Paul S. Nerenberg <psn.berkeley.edu>
Date: Fri, 23 Jul 2010 09:33:04 -0700

Hi Valerie,

In your tleap script, just add the lines:

select selection
relax selection

(where selection can be unit, unit.residue, etc. -- in other words,
just the usual atom selection)

Best,

Paul


On Jul 23, 2010, at 9:11 AM, Valerie Fako wrote:

> Hello everyone,
>
> I just had a quick question: does anyone know if there is a command
> that can
> be used with a tleap script to relax a protein system? I know in
> xleap you
> can choose "relax selection," I just wasn't sure what the command
> would be
> for tleap.
>
> Thanks!
>
> Valerie Fako
> Department of Pharmacology
> Indiana University School of Medicine
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jul 23 2010 - 10:00:05 PDT
Custom Search