Re: [AMBER] Adding Ions.

From: case <>
Date: Wed, 30 Jun 2010 14:15:56 -0400

On Wed, Jun 30, 2010, Ajay Ummat wrote:

> I want to add 150mM Na+ Cl- ions in my system. I used the command: addions x
> Na+ 91 Cl- 96 (as my system had +ve 5 charge and I needed 96 each of Na+ and
> Cl-). When I visualize the result of adding ions, leap has added all the
> ions only on one particular side of the protein.

This sounds like an old problem...what version of AmberTools are you using?

One thing you might try is to use sleap rather than tleap, to see if that


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Received on Wed Jun 30 2010 - 11:30:06 PDT
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