[AMBER] is there any command to superimpose/align a protein in amber8 to get less RMSD residue wise

From: REENU KHATTRI <ibi2008024.iiita.ac.in>
Date: Mon, 28 Jun 2010 07:10:24 +0530

sir i were used atomicfluct command and mask .CA but the rmsd per residue
wise is large my residue are 1 to 118 and iam using 3500 ps simultion crd
file how can i fit like in rmsd vs time calculation to allign my protein to
get less fluction .please help me.
script is trajin. mdcrd file from 1 to 3500
atomicfluct out file byres
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Received on Sun Jun 27 2010 - 19:00:04 PDT
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