On Wed, Jun 23, 2010 at 4:05 PM, jane <jane.chen.1016.gmail.com> wrote:
> Hi Heather,
>
> Thanks for your reply. But the message still shows that it is not set after
> I typed in that command.
>
> [xiuchen.sw2123-06 ~/Desktop]$ setenv
> AMBERHOME/home/xiuchen/Desktop/amber11
> [xiuchen.sw2123-06 ~/Desktop]$
> /home/xiuchen/Desktop/amber11/bin/antechamber -i HSA-1E78_h.pdb -fi pdb -o
> HSA-1E78.mol2 -fo mol2 -c bcc -s 2
> AMBERHOME is not set!
> [xiuchen.sw2123-06 ~/Desktop]$ cd amber11
> [xiuchen.sw2123-06 amber11]$ cd bin
> [xiuchen.sw2123-06 bin]$ /home/xiuchen/Desktop/amber11/bin/antechamber -i
> HSA-1E78_h.pdb -fi pdb -o HSA-1E78.mol2 -fo mol2 -c bcc -s 2
> AMBERHOME is not set!
> [xiuchen.sw2123-06 bin]$
>
> Thanks,
> Ping
>
>
>
> On Wed, Jun 23, 2010 at 3:45 PM, Heather Condurso <condurso.bc.edu> wrote:
>
>> setenv AMBERHOME /(path to amber)
>>
>>
>> | On Wed, 23 Jun 2010 15:42:06 -0500
>> | Ping <xiuchen.iastate.edu> wrote:
>> | Hi all,
>> |
>> | When I am using the antechamber command, a message shows that "
>> AMBERHOME is
>> | not set". Does anyone know how to fix this problem?
>> |
>> | Thank you very much!
>> |
>> | Ping
>> | _______________________________________________
>> | AMBER mailing list
>> | AMBER.ambermd.org
>> | http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
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Received on Wed Jun 23 2010 - 14:30:03 PDT
