[AMBER] stripping water and cross-correlation analysis

From: Homa Azizian <homa.azizian.anu.edu.au>
Date: Wed, 23 Jun 2010 11:23:08 +1000

Is it true that for calculating correlation it should be better to strip :WAT before?
I have done to analysis of cross-correlation of C-alpha of protein one with previously strip :WAT and the other one without it.
the result of 2d-plot from cross-correlation in totaly diffrent. I want to know why it happed? what is the effect of stripping water on C-alpha?
Thank you for consideration.
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Received on Tue Jun 22 2010 - 18:30:04 PDT
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