Amber10
> -----Original E-mail-----
> From: "Sushil Mishra" <sushilbioinfo.gmail.com>
> Sent Time: 2010-6-23 0:42:24
> To: "AMBER Mailing List" <amber.ambermd.org>
> Cc:
> Subject: Re: [AMBER] about alanine scanning
>
> which version of AMBER are u using ??
>
>
> On Tue, Jun 22, 2010 at 5:47 PM, <lidansa.mail.ustc.edu.cn> wrote:
>
> > Dear all:
> > I use mm_pbsa.pl to perform alanine scaning, and I mutated two
> > residues to ala. but received the error in alanine_scanning.log below. Is
> > there anyone who has dealt with this issue before? thank you for your help!
> > =>> Checking sanity
> > Checking GENERAL
> > Implicit SAS calc by sander
> > Checking GC
> > Checking AS
> > Checking TRAJ
> > Checking MM
> > Checking PB
> > Checking GB
> >
> > =>> Creating input
> > Sander input
> > PBSA input
> > make_crd input
> >
> > =>> Creating coordinates
> > Executing makecrd
> >
> > Amber8 Module: make_crg_hg
> >
> > usage: make_crd_hg < trajectory_file
> >
> > Box info found: 73.8120000000000 73.8120000000000
> > 73.8120000000000
> > Something wrong with NGR 3139 3149
> >
> >
> > linda
> >
> >
> >
> >
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Received on Tue Jun 22 2010 - 18:00:04 PDT
