[AMBER] How to read the motion of PCA?

From: Catein Catherine <askamber23.hotmail.com>
Date: Tue, 22 Jun 2010 23:16:36 +0800

Dear All,


In order to read the PCA vectors motions. I found we have to run IED with vmd.


I tried to install the vmd 1.8.7. Under the vmd 1.8.7 directory, I found a python folder. I also downloaded and installed Numeric-24.2 and numpy1.4 to this directory. I also downloaded and installed python-2.6 to my computer.


I also set the path in .bashrc file as follows:


alias PYTHONPATH=/vmd-1.8.7/python/Numberic-24.2

export PYTHONHOME=/python-2.6.5/


However, whenever, I type gopython, error of "command not found" is found. What should I do next?


Can I used other program to read the PCA motions?


best regards,


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Received on Tue Jun 22 2010 - 08:30:07 PDT
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