[AMBER] MMPBSA warning

From: George Tzotzos <gtzotzos.me.com>
Date: Fri, 18 Jun 2010 12:54:54 +0200

Hi everybody,

I got the following warning during my binding affinity calculation, which terminated successfully

WARNINGS:
igb=2 should be used with mbondi2 pbradii set. Yours are modified Bondi radii (mbondi)

I'd appreciate if anyone could enlighten me on the significance of this warning and which is the right flag to use for modified Bondi raddii

Regards

George


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Received on Fri Jun 18 2010 - 04:00:05 PDT
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