OMG!!!!!!!!!!!!!!! THANK YOU SOOOO MUCH! I knew it had to be a silly
problem like that! I actually tried to saveoff the lib file with the
residue name in caps, but I tried to name the file with CAPS to
distinguish which also made it fail for other reasons, but OMG thank
you!
~Heather
On Jun 16, 2010, at 10:51 PM, case wrote:
> On Tue, Jun 15, 2010, Heather Condurso wrote:
>
>
>>> loadoff ye1.lib
>> Loading library: ./ye1.lib
>>> complex = loadpdb 2NP9S_trunc.pdb
>> Loading PDB file: ./2NP9S_trunc.pdb
>> Unknown residue: YE1 number: 423 type: Terminal/beginning
>
> Residue names are case sensitive. In "ye1.lib" the residue name is
> "ye1",
> whereas in the pdb file it is "YE1".
>
>> Unknown residue: OXY number: 424 type: Nonterminal
>
> You also have a residue in the pdb called "OXY" (looks like
> dioxygen). You
> will need to make a library file for this as well.
>
> ....dac
>
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Heather Condurso
UF- Department of Chemistry
Bruner Lab
Leigh 337
condurso.ufl.edu
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Received on Wed Jun 16 2010 - 20:30:06 PDT
