[AMBER] correlation matrix in PTRAJ

From: <luzhenw1.msu.edu>
Date: Fri, 11 Jun 2010 09:54:18 -0400

Dear All:

Can anyone give me a clarificaton about what correlation is calculated when use 'Matrix correl' in PTRAJ? I check the previous post, someone claims it might be so-called  DCCM (Dynamic Cross Correlation Map  analysis). which is defined as: Cij=<?ri*?rj>/(<?ri>2<?rj>2)1/2. r is the positional vector. Is this correct?  Thanks a lot.
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Received on Fri Jun 11 2010 - 07:00:03 PDT
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