Re: [AMBER] ambertools1.2 compilation error

From: case <case.biomaps.rutgers.edu>
Date: Thu, 10 Jun 2010 22:06:52 -0400

On Thu, Jun 10, 2010, colvin wrote:
>
> I have been trying to compile and install *ambertools1.2* for *amber10*,

> ./nab -c -DDATDIR='"/usr/local/amber10/dat"' na_anal.nab
> na_anal.c:2417:41: warning: missing terminating " character
> na_anal.c: In function ‘helixanal’:
> na_anal.c:2417: error: expected ‘)’ before ‘is’
> na_anal.c:2417: error: stray ‘\’ in program
> na_anal.c:2417:40: warning: missing terminating " character
> na_anal.c:2417: error: missing terminating " character
> na_anal.c:2419: error: expected ‘;’ before ‘}’ token

Weird....see below.

> make: *** [install] Error 2
>
> i then cd ../test and type make -f Makefile_at test, these messages
> appeared:
>
> /bin/sh: /usr/local/amber10/bin/nab: No such file or directory

Of course: if the installation of NAB failed, then the test cases certainly
won't work.

>
> Testing the C compiler:
> gcc -m64 -o testp testp.c

Try removing the -m64 from the config.h file. Type "make -f Makefile_at
clean", then "make -f Makefile_at install".

However, nothing may work here -- Fedora 12 came out after AmberTools 1.2,
and only AmberTools 1.4 with the bug fixes is likely to work for 64-bit
Fedora 12.

....dac


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Received on Thu Jun 10 2010 - 19:30:03 PDT
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