Re: [AMBER] regarding forcefield for rna

From: case <>
Date: Wed, 9 Jun 2010 20:23:30 -0400

On Wed, Jun 09, 2010, Asfa Ali wrote:
> In this respect, I should ask you one more thing. I have created a 12mer
> ds-dna using NAB and simulated it under leaprc.ff99bsc0. Here also the
> duplex has unwinded.

Can you compare what you did to the procedure described in tutorial B1?
A dna-duplex should not unwind in any reasonable simulation time if you are


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Received on Wed Jun 09 2010 - 17:30:05 PDT
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