Re: [AMBER] regarding forcefield for rna

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 9 Jun 2010 09:43:26 -0400

Hello,

Take a look at the leaprc.ff99bsc0...

It already loads the ff99SB parameters as well as the ff99bsc0 parameter
modifications, so you don't want to load both force fields, just ff99bsc0.
The only file not loaded is the RNA_CI.lib. InSuk's instructions are the
proper ones to follow.

Good luck!
Jason

On Wed, Jun 9, 2010 at 9:21 AM, InSuk Joung <i.joung.gmail.com> wrote:

> Add the following line after sourcing leaprc.ff99bsc0:
>
> source leaprc.ff99bsc0
> loadoff RNA_CI.lib
>
> Good luck.
>
> On Wed, Jun 9, 2010 at 9:04 AM, Asfa Ali <asfa.iisc.gmail.com> wrote:
>
> > Hi,
> >
> > No, I didn't load "RNA_CI.lib". How to do so? plz tell me the steps.
> >
> > Asfa
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Best,
> InSuk Joung
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>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Wed Jun 09 2010 - 07:00:05 PDT
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