Thanks, David
>> I am trying to recompile Amber10/AmberTools1.2 since we have upgraded from OS X leopard to Snow Leopard. While everything worked on Leopard, now it doesn't compile on Snow leopard. Any help is greatly appreciated!
>>
>> System: OS X 10.6.2 with Xcode 3.2.2, Intel compiler 10.1.014, Amber 10, AmberTools 1.2:
>>
>
> It would probably be in your best interest to use gcc instead of icc.
> That being said, you are getting undefined symbols, which means that your libraries are not being found.
> You should probably uninstall icc/ifort, install and update Snow Leopard and XCode to the latest version, then reinstall the Intel compilers.
>
I did a upgrade install from Leopard to Snow Leopard, then updated to10.6.2 and latest Xcode, then uninstalled icc/ifort, and reinstall it again. I will try to upgrade to 10.6.3 see if it helps.
> Following this, make sure that you "source" the environment scripts provided by Intel withing your ~/.bash_profile
> You will need to do something like this:
>
> # Additions for Intel compiler
> . /Library/Frameworks/Intel_MKL.framework/Versions/Current/tools/environment/mklvarsem64t.sh
> . /opt/intel/Compiler/10.1/014/bin/ifortvars.sh intel64
> . /opt/intel/Compiler/10.1/014/bin/iccvars.sh intel64
> # End of ~/.bash_profile additions
>
> Once you have done this, start a new bash shell and start all over with a clean Amber10 directory, applying all of the AmberTools patches and Amber10 patches first.
>
I have done all these before compiling.
Thanks.
Chen
>
>
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Received on Fri Apr 30 2010 - 09:00:05 PDT
