Re: [AMBER] molecular surface area

From: Balazs Jojart <>
Date: Fri, 23 Apr 2010 08:26:58 +0200

Hello Geyan,
see my previous post about this issue:


geyan wrote:
> Has anybody done this analysis before?
> I want to focus on the protection of protein to DNA.Now there is a interesting thing,when the DNA is in nature,the surface area is one figure,when the protein bind to it, both the surface area of protein and DNA will change,from which we can measure the protection effect.
> My question is how to quantify the surface area.which program can do this well and easily?I think amber is powerful enough to figure it out easily,but how?
> Many thanks.
> --------------
> geyan
> 2010-04-23
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Received on Thu Apr 22 2010 - 23:30:02 PDT
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