[AMBER] molecular surface area

From: geyan <geyan.big.ac.cn>
Date: Fri, 23 Apr 2010 13:49:01 +0800

Has anybody done this analysis before?
I want to focus on the protection of protein to DNA.Now there is a interesting thing,when the DNA is in nature,the surface area is one figure,when the protein bind to it, both the surface area of protein and DNA will change,from which we can measure the protection effect.
   My question is how to quantify the surface area.which program can do this well and easily?I think amber is powerful enough to figure it out easily,but how?
Many thanks.

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Received on Thu Apr 22 2010 - 23:00:02 PDT
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