[AMBER] bond command

From: Siddharth Rastogi <siddharthrastogi08.gmail.com>
Date: Thu, 22 Apr 2010 18:31:02 -0600

Dear AMBER users,

I understand from Amber manual that, the *bond* command in leap can generate
the bond between atom1 and atom2.

Both of these ATOMs must be contained by the same UNIT. I have a doubt

I have a sugar molecule, which I want to attach to the protein.
Is it possible to create a bond between one atom of sugar (atom1) and
another atom from protein (atom2) molecule by using the Leap's bond

If it is NOT possible through Leap, can anybody suggest how I will generate
the complex of sugar and protein ?

Thanks in advance for your kind suggestion.

Siddharth Rastogi
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Received on Thu Apr 22 2010 - 18:00:02 PDT
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