Re: [AMBER] slightly off topic: suggestions for DNA single strand simulations

From: Asfa Ali <>
Date: Wed, 14 Apr 2010 09:51:44 +0530

Hi Thomas,

I work with DNA G-quadruplex and wanted to simulate single strande DNA to
G-quadruplex DNA.

As you said, I started with DNA double strand and deleted one strand to make
it ss-DNA and as expected, the conformation didn't change with simulation.
How would I generate random single stranded structure?

Is it possible to simulate that ss-DNA to a quadruplex?

Thanks a lot...
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Received on Tue Apr 13 2010 - 21:30:02 PDT
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