Re: [AMBER] Problems during AMBER 10 compilation.

From: Zuzanna K. Ścigacz <>
Date: Tue, 6 Apr 2010 15:13:54 +0200

Dnia wtorek 06 kwiecień 2010, case napisał:
> On Tue, Apr 06, 2010, Zuzanna K. Ścigacz wrote:
> > [r25] ~/amber10/src/lib > make -n sys.o
> > cpp -traditional -P -DNO_SANDER_DIVCON -DBINTRAJ sys.f > _sys.f
> > gfortran -c -O0 -o sys.o _sys.f
> OK: I give up on this one. Your ../config_amber.h file has
> -Dsecond=ambsecond in FPPFLAGS (from a previous mail), but this is not
> showing up in make.
> Unless someone else on the list has a bright idea, you'll just have to edit
> sys.f, or otherwise debug this yourself.

As far as I can see it does not shows in make because Makefile of sys.o does
not include config_amber.h but config.h

I have added -Dsecond=ambsecond to config.h as well:

[r25] ~/amber10/src/lib > make -n sys.o
cpp -traditional -P -DNO_SANDER_DIVCON -DBINTRAJ -Dsecond=ambsecond sys.f >
gfortran -c -O0 -Dsecond=ambsecond -o sys.o _sys.f

Yet still sys.a doesn't include that symbol.


Zuzanna K. Ścigacz
HPC Systems Administrator
Poznan Supercomputing and Networking Center
Institute of Bioorganic Chemistry Polish Academy od Sciences
AMBER mailing list
Received on Tue Apr 06 2010 - 06:30:02 PDT
Custom Search