Re: [AMBER] rna simulation

From: shamoon siddiqui <shamoonsiddiqui.gmail.com>
Date: Mon, 5 Apr 2010 12:29:47 +0530

absolutely right

On Mon, Apr 5, 2010 at 12:17 PM, Asfa Ali <asfa.iisc.gmail.com> wrote:

> Hi,
>
> I'm using leaprc.ff99bsc0 and there in the *addPdbAtomMap* column, it is
> written :
>
> { "HO5'" "H5T" }
> { "HO3'" "H3T" }
>
>
> So I have changed HO'5 and HO'3 with H5T and H3T in the RNA pdb file and
> now
> it is working fine.
>
> Am I right?
>
> Asfa.
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>



-- 
With best regards
Dr. Shamoon Ahmad Siddiqui
DBT Postdoctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science
Bangalore-560012, India
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Received on Mon Apr 05 2010 - 00:30:02 PDT
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