Re: [AMBER] rna simulation

From: Asfa Ali <>
Date: Mon, 5 Apr 2010 12:17:38 +0530


I'm using leaprc.ff99bsc0 and there in the *addPdbAtomMap* column, it is
written :

 { "HO5'" "H5T" }
 { "HO3'" "H3T" }

So I have changed HO'5 and HO'3 with H5T and H3T in the RNA pdb file and now
it is working fine.

Am I right?

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Received on Mon Apr 05 2010 - 00:00:02 PDT
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