You are great! After cheking that xterm, xclock, and even programs like
molden or jmol worked fine via ssh -X also, I removed the -static flag when
compiling Ambertools/icc, Amber/ifort and now I can launch xleap.
Thank You very much!
Amedeo
2010/3/31 case <case.biomaps.rutgers.edu>
> On Wed, Mar 31, 2010, Amedeo Capobianco wrote:
> >
> > I have successfully installed amber by using icc (serial, -static flag)
> on
> > a debian (intel pc 32 bit, dual Xeon HP). Moreover both AmberTools and
> > Amber10 passed all tests except one, exiting with an error due to digits
> > mismatch. Nevertheless I never succeeded in running xleap. If I try to
> > launch xleap I always get errors like this:
> >
> > -I: Adding /home/amedeo/amber10/dat/leap/prep to search path.
> > -I: Adding /home/amedeo/amber10/dat/leap/lib to search path.
> > -I: Adding /home/amedeo/amber10/dat/leap/parm to search path.
> > -I: Adding /home/amedeo/amber10/dat/leap/cmd to search path.
> > XIO: fatal IO error 0 (Success) on X server "localhost:13.0"
> > after 15 requests (13 known processed) with 0 events remaining.
> >
> > I have read tons of posts, and I'm persuaded the problem lies in the X11
> > server. However despite of all my readings, I wasn't able to extrapolate
> a
> > working solution to my problem. All the x11 related packages were
> installed
> > by using apt-get, even x-dev and libx11-dev, before compiling amber.
> >
>
> Do "ordinary" X applications work, e.g. can you run "xterm" or "xclock"?
> That would help determined whether this is something specific to Amber or
> not.
>
> Try leaving out the "-static" flag: if there are problems, it's usually
> seen
> at compile time (not run-time), but other x applications are working, its
> worth a try.
>
> People have been running xleap for 20 years or so, so it is probably
> nothing
> specific about the age of your distribution.
>
> ....dac
>
>
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Received on Wed Mar 31 2010 - 12:30:02 PDT
