[AMBER] DEBIAN: cannot get rid of xleap

From: Amedeo Capobianco <myamberml.gmail.com>
Date: Wed, 31 Mar 2010 19:31:54 +0200

Dear all,

I have successfully installed amber by using icc (serial, -static flag) on
a debian (intel pc 32 bit, dual Xeon HP). Moreover both AmberTools and
Amber10 passed all tests except one, exiting with an error due to digits
mismatch. Nevertheless I never succeeded in running xleap. If I try to
launch xleap I always get errors like this:

-I: Adding /home/amedeo/amber10/dat/leap/prep to search path.
-I: Adding /home/amedeo/amber10/dat/leap/lib to search path.
-I: Adding /home/amedeo/amber10/dat/leap/parm to search path.
-I: Adding /home/amedeo/amber10/dat/leap/cmd to search path.
XIO: fatal IO error 0 (Success) on X server "localhost:13.0"
      after 15 requests (13 known processed) with 0 events remaining.

I have read tons of posts, and I'm persuaded the problem lies in the X11
server. However despite of all my readings, I wasn't able to extrapolate a
working solution to my problem. All the x11 related packages were installed
by using apt-get, even x-dev and libx11-dev, before compiling amber.

So my questions are:

1) what have I missed?
2) Is there any log or file I could post here for getting help?
3) Can you suggest a Linux distro which is known to work fine w. amber, to
replace my old debian ?

Thank you all.

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Received on Wed Mar 31 2010 - 11:00:03 PDT
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