Re: [AMBER] about amber force field

From: case <>
Date: Mon, 22 Mar 2010 10:41:43 -0400

On Mon, Mar 22, 2010, Carlos Simmerling wrote:

> In my protein-DNA work I use
> ff99SB for proteins and bsc0 for nucleic acids.

Just a note: this combination is what you get if you use the (poorly-named?)
leaprc.ff99bsc0. Note that in Amber10, only DNA nucleic acids used the
"Barcelona" modifications; RNA did not. This will be fixed in Amber11, but
we haven't yet decided what name to give it. [Carlos: we should chat this
week about this.]


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Received on Mon Mar 22 2010 - 08:00:02 PDT
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