Hi all amber users,
I want to do MD about a system of proteins and DNA complex. Before the MD,I think the first step is to minimize the protein 3D structure which is produced by homology modelling.
My question is choosing which force field for protein,which one for DNA, and which one for the complex?all using ff99SB?
By the way,amber9 and amber10,which one is better?I have heard of many unexpected problems for amber10 and I met one in MM_PBSA test
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geyan
2010-03-22
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Received on Mon Mar 22 2010 - 01:30:02 PDT
