[AMBER] Enquiry regarding MD run

From: Pallavi Mohanty <pallavipmohanty.gmail.com>
Date: Mon, 15 Mar 2010 12:59:58 +0530

Hello all,
 Running equilibration and taken below mentioned parameters
 imin = 0,
  ntx = 1,
  ntb = 1,
  scnb=2, scee=1.2,
  dielc=2,
  cut = 16,
  ntc = 2,
  ntf = 2,
  tempi = 0.0,
  temp0 = 300.0,
  ntt = 3,
  gamma_ln = 1.0,
  nstlim = 100000, dt = 0.001,
  ntpr = 100, ntwx = 100, ntwr = 1000
 /
after each run its giving an output as NSTEP = 800 TIME(PS) =
0.800 TEMP(K) = 498.77 PRESS = 0.0
 Etot = 14702.7141 EKtot = 45245.1250 EPtot =
-30542.4109
 BOND = 7777.3361 ANGLE = 11167.4726 DIHED =
4271.4812
 1-4 NB = 1833.3012 1-4 EEL = 5701.1018 VDWAALS =
-3104.8477
 EELEC = -58188.2561 EHBOND = 0.0000 RESTRAINT =
0.0000
 Ewald error estimate: 0.5280E-05
 ------------------------------------------------------------------------------

vlimit exceeded for step 800; vmax = 36.1486
vlimit exceeded for step 801; vmax = 24.1706
vlimit exceeded for step 802; vmax = 259.5763
vlimit exceeded for step 803; vmax = 24.2270
vlimit exceeded for step 804; vmax = 21.3719
vlimit exceeded for step 805; vmax = 22.9561
 Do revert me where i am lacking.Thanks in advance


-- 
Regards,
Pallavi Mohanty
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Received on Mon Mar 15 2010 - 01:00:02 PDT
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