Re: [AMBER] addions or solvate-which one first

From: Nicee <nicee.srivastava.imtech.res.in>
Date: Mon, 15 Mar 2010 09:30:22 +0530 (IST)

Thanks for the reply

Nicee.


>> If you add ions after adding water molecules, your ions will be
>> mostly placed near the boundary of the periodic box.
>
> This is not correct, unless someone has rewritten this function.
> Ions will be placed as close as if they were placed first, except
> the nearest water will be removed and the ion placed there.
>
> Place ions first, and more waters will be removed due to partial
> overlaps.
>
> Bill
>
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Received on Sun Mar 14 2010 - 21:30:03 PDT
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