Re: [AMBER] problem to generate parameters files from NMR solved DNA structure

From: case <>
Date: Thu, 11 Mar 2010 07:46:58 -0500

On Thu, Mar 11, 2010, Ananya Paul wrote:

> When I am trying to generate parameter file (.pratop, .inpcrd) taking NMR
> solved structure 2HY9, it is showing following error
> FATAL: Atom .R<DT 1>.A<H5' 33> does not have a type.
> FATAL: Atom .R<DT 1>.A<H5'' 34> does not have a type.

We need to know which leaprc file you used and which version of AmberTools
you are using. It's probably best to report all the leap commands that were
used. It looks like you have a current (version 3) pdb file, and up-to-date
Amber files should handle this fine.


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Received on Thu Mar 11 2010 - 05:00:06 PST
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