[AMBER] problem to generate parameters files from NMR solved DNA structure

From: Ananya Paul <a3diisc.gmail.com>
Date: Thu, 11 Mar 2010 13:00:08 +0530

Dear Sir,
 When I am trying to generate parameter file (.pratop, .inpcrd) taking NMR
solved structure 2HY9, it is showing following error
FATAL: Atom .R<DT 1>.A<H5' 33> does not have a type.
FATAL: Atom .R<DT 1>.A<H5'' 34> does not have a type.
FATAL: Atom .R<DT 1>.A<H2' 35> does not have a type.
FATAL: Atom .R<DT 1>.A<H2'' 36> does not have a type.
FATAL: Atom .R<DT 1>.A<HO5' 37> does not have a type
 how I will change the naming of the following atom type.
please help me.
Thank you,
Ananya 

-- 
Ananya Paul
Senior Research Fellow
Dept. of Organic Chemistry
Indian Institute of Science, Bangalore
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Received on Thu Mar 11 2010 - 00:00:02 PST
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