Re: [AMBER] AmberTools1.3 installation error

From: Anna Dejardin <>
Date: Wed, 03 Mar 2010 11:47:28 +0000

Hi All,

I tried replacing cp -p with mv in the Makefile. But now when I run
tests it seems to stop short and the final message it prints is this error:

cd antechamber/top2mol2 && ./Run.top2mol2

 Cannot open atom type corresponding file
/homes/acd/amber11:/dat/antechamber/ATOMTYPE_CHECK.TAB, exit
  ./Run.top2mol2: Program error
make: *** [test.antechamber] Error 1

Any ideas what's up?



case wrote:
> On Wed, Feb 24, 2010, Bill Ross wrote:
>>> (unless by ignoring the error, it also
>>> didn't copy the files over to the bindir).
>> The error indicates the cp failed. Ignoring it just lets the
>> 'make' continue, it doesn't make the cp succeed.
> Only the OP knows for sure, but the error message indicated to me that "cp -p"
> failed in the "preserve permissions" part, not in the copy itself. If it
> really did *not* copy, change "cp -p" to "mv" (which is in CVS for the next
> release.)
> ...dac
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Received on Wed Mar 03 2010 - 04:00:04 PST
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