[AMBER] RMSF calculation is correct ?

From: Sarra Geranil <sgeranil.yahoo.com>
Date: Tue, 2 Mar 2010 09:35:07 -0800 (PST)

hello every one
 
I have a question,
which might appear very simple to everyone, but a simple response is what I'm
looking for as well.
I want to calculate the RMSF for the large number of atoms, I try to use ptraj's command ,atomicfluct out, but this work very time consuming .
I decided to calculate it manually from pdb files which were derived from snapshots.
could you please say to me if I have acted correctly until now, what can I calculate RMSF?

THANKS FOR YOUR EVERY WORK


      
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Received on Tue Mar 02 2010 - 10:00:03 PST
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