Thank you very much Prof. Case. There was no error message. It was like:
{I am attaching herewith the .prepin and .frcmod files as well.}
Building topology.
Building atom parameters.
Building bond parameters.
Could not find bond parameter for: OS - O2
Could not find bond parameter for: CK - P
Building angle parameters.
Could not find angle parameter: OS - O2 - P
Could not find angle parameter: CT - OS - O2
Could not find angle parameter: H5 - CK - P
Could not find angle parameter: CK - P - O2
Could not find angle parameter: CK - P - O2
Could not find angle parameter: CK - P - OS
Could not find angle parameter: NB - CK - P
Could not find angle parameter: N* - CK - P
Building proper torsion parameters.
** No torsion terms for OS-O2-P-O2
** No torsion terms for OS-O2-P-OS
** No torsion terms for CT-OS-O2-P
** No torsion terms for H5-CK-P-O2
** No torsion terms for H5-CK-P-O2
** No torsion terms for H5-CK-P-OS
** No torsion terms for NB-CK-P-O2
** No torsion terms for NB-CK-P-O2
** No torsion terms for NB-CK-P-OS
** No torsion terms for N*-CK-P-O2
** No torsion terms for N*-CK-P-O2
** No torsion terms for N*-CK-P-OS
Building improper torsion parameters.
old PREP-specified impropers:
<6OG 7>: C4 C8 N9 C1'
<6OG 7>: C5 N9 C4 N3
<6OG 7>: N2 N3 C2 N1
<6OG 7>: C2 H57 N2 H59
<6OG 7>: C5 N1 C6 O6
<6OG 7>: C6 C4 C5 N7
<6OG 7>: H55 N9 C8 N7
total 630 improper torsions applied
7 improper torsions in old prep form
Building H-Bond parameters.
Parameter file was not saved.
On Tue, Mar 2, 2010 at 6:41 PM, case <case.biomaps.rutgers.edu> wrote:
> On Tue, Mar 02, 2010, N.R. Jena wrote:
>
>> However, after fusing these
>> parameters .... I could not save proper .top and .crd
>> files for the whole DNA.
>
> Why not? What commands did you use, and (most importantly): what was the
> error message?
>
> ....dac
>
>
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Received on Tue Mar 02 2010 - 09:30:03 PST
