On Sun, Feb 28, 2010 at 2:00 PM, Ivan Gladich <igladich.purdue.edu> wrote:
> Dear all
> I have some problem to translate a restrt file.
> Indeed, after a constant pressure simulation, I would like to translate
> my system in my box to perform a constant volume simulation in a larger
> box.
> I have seen in the web that "translate" can do it but it wants a .pdb
> format file.
> For this reason I did
>
> $AMBERHOME/exe/ambpdb -p topol.prmtop <restrt > my.pdb
>
> after that I did
>
> $AMBERHOME/exe/translate -i my.pdb -vx 0 -vy 0 -vz 40 -o transl
translate -h
will give you help. You're missing the "-f format" flag. Add -f pdb
to your command.
Good luck!
Jason
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Sun Feb 28 2010 - 11:30:03 PST
