Hello,
Thank you replying. I agree with you. Then how is it possible to get
diffusion coefficient values of individual ions from such simulation data.
Any other reasonable way?
Regards
Monika
On Sat, Feb 27, 2010 at 2:52 PM, <hannes.loeffler.stfc.ac.uk> wrote:
> > But msds of the atoms of interest (no doubt in increasing
> > order) are spiky, irregular, with very small linear behavior inbetween.
>
> Yes, that's to be expected. That simply shows the random movements of
> individual particles. Only when you average over a large numbder of
> particles will you get a more linear behaviour. It will also make a
> difference whether your ions move in a homogeneous environment or not.
>
> --
> Scanned by iCritical.
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
((¯`·_.·[Monika]·._·´¯))
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sat Feb 27 2010 - 02:00:03 PST