RE: [AMBER] Periodic Boundary in AMBER(PMEMD) GPU Acceleration support ?

From: ZhaoLei <jackyzhao010.hotmail.com>
Date: Sat, 27 Feb 2010 03:57:59 +0000

Hi Ross
 Do you mean that Amber11 will support multiple Nvidia Video card acceleration or just support one Nvidia Video Card acceleration ?


Thanks,

Jacky

> Date: Fri, 26 Feb 2010 15:40:26 +0900
> From: hi-watanabe.hpc.co.jp
> To: amber.ambermd.org
> Subject: Re: [AMBER] Periodic Boundary in AMBER(PMEMD) GPU Acceleration support ?
> CC: ross.rosswalker.co.uk
>
> Hi Ross,
>
> Thanks for your rapid reply.
> I'm looking forward to the PME working version, your doc and benchmarks!
>
> Thanks,
>
> > Hi Hiromasa,
> >
> > Right now the patch for AMBER 10 provides on GB support. Full GPU support
> > (NVIDIA) including GB and PME will be available as part of the upcoming
> > AMBER 11 release. I will be putting together documentation and benchmarks
> > for both current Tesla and new Fermi cards in the next month or so. We have
> > PME working in our development version and are in the final phases of
> > testing and validation.
> >
> > Stay tuned.
> >
> > All the best
> > Ross
> >
> >> -----Original Message-----
> >> From: amber-bounces.ambermd.org [mailto:amber-bounces.ambermd.org] On
> >> Behalf Of Hiromasa WATANABE
> >> Sent: Thursday, February 25, 2010 7:06 PM
> >> To: amber.ambermd.org
> >> Cc: hi-watanabe.hpc.co.jp
> >> Subject: [AMBER] Periodic Boundary in AMBER(PMEMD) GPU Acceleration
> >> support ?
> >>
> >> Hi Amber fans,
> >>
> >> I see the great page, http://ambermd.org/gpus/ ,
> >> in the Provisional Benchmarks (TRPCage, Myoglobin
> >> and Nucleosome), ntb=0 is set.
> >>
> >> In the AMBER(PMEMD) GPU Acceleration support,
> >> is periodic boundary computation supported ?
> >> If yes, how would be it's performance ?
> >>
> >> thanks in advance,
> >>
> >> --
> >> Hiromasa WATANABE
> >> Research Development Department, HPC SYSTEMS Inc.
> >> Head office: Time 24 Building 10F North,
> >> 2-4-32 Aomi, Koutou-ku, Tokyo, Japan 135-8073.
> >> Email: hi-watanabe.hpc.co.jp
> >> www.hpc.co.jp
> >>
> >> _______________________________________________
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> >
> >
> > _______________________________________________
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> > AMBER.ambermd.org
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> >
>
> --
> Hiromasa WATANABE
> Research Development Department, HPC SYSTEMS Inc.
> Head office: Time 24 Building 10F North,
> 2-4-32 Aomi, Koutou-ku, Tokyo, Japan 135-8073.
> Email: hi-watanabe.hpc.co.jp
> www.hpc.co.jp
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
                                               
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Received on Fri Feb 26 2010 - 20:00:03 PST
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