Hello,
I have been very interested in GPU support in Ambe= r and wanted to know
it's progress since the last update in September.= Has there been any work
to support explicit solvent? If anyone knows any r= esources on the matter
other than the typical Nvidia and general Cuda webpa= ges, I'd be very
appreciative. Perhaps on how Cuda is being implemented on = pmemd, or even
other MD programs?
Although this is n= ot the main concern of this post, I should also note
that the Nvidia patch = did not patch so smoothly. Many "hunks" failed to
patch, and more specifica= lly it kept complaining that files already
contained a patch. It obviously = then failed to compile. If this is a new
concern, I can post verbatim what = it said in a few hours as I am not at a
workstation with Amber support. I t= ried using Amber 10 and 1.2 tools,
following the instructions on the Amber = Nvidia support webpage. Cuda and
its respective SDK were installed and work= ed as expected.
Regards,
Trevor Gokey
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Received on Thu Feb 18 2010 - 17:00:03 PST
