Re: [AMBER] how to generate acetone box

From: FyD <fyd.q4md-forcefieldtools.org>
Date: Wed, 17 Feb 2010 23:47:03 +0100

Dear Parvesh,

> I am interested in doing explicit MD simulations for a heptapeptide. I was
> able to generate methanol and tip3p boxes, as their input parameters were
> present in Amber data base. Is there anybody who can help me to generate a
> box of acetone??

You could look for in R.E.DD.B. using the "Download projects" utility:

Search project(s) by
-- R.E.DD.B. code (if known)
-- Molecule keyword
-- Molecule name
-- Author lastname
-- Theory level/Basis set
         Text acetone

You will find various R.E.DD.B. projects, among them:
http://q4md-forcefieldtools.org/REDDB/projects/W-46/

You use the LEaP script to load the FF atom types:
http://q4md-forcefieldtools.org/REDDB/projects/W-46/script1.ff

Among many other emails, see:
http://archive.ambermd.org/200909/0211.html

Or you search . http://archive.ambermd.org/200909/0211.html
    using "Solvent box"

regards, Francois



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Received on Wed Feb 17 2010 - 15:00:05 PST
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