I have since tried the same test with gcc/g++/gfortran 4.4.1 and also with
Intel icc/ifort 11.1 with the same error.
Neil.
On Tuesday 16 February 2010 5:17:47 am Alan wrote:
> I still have the very first release of AT 1.3 compiled with intel on Mac
> OSX 10.6.2 64 bits without any patch and I do see this problem.
>
> Besides, I reported sometime ago this:
> "sleap in AmberTools 1.3 is not working anymore for me"
>
> http://archive.ambermd.org/200912/0410.html
>
> http://archive.ambermd.org/200912/0417.html (Case's reply)
>
> I would love to know if there's already a solution for that as in
> http://ambermd.org/bugfixesat.html has no reference to this problem for AT
> 1.3.
>
> Many thanks,
>
> Alan
>
> On Mon, Feb 15, 2010 at 21:14, case <case.biomaps.rutgers.edu> wrote:
> > On Mon, Feb 08, 2010, Neil Henson wrote:
> > > With AmberTools 1.3 compiled with gcc/gfortran/g++ 4.4.2 .
> > >
> > > $ cat water.pdb
> > > ATOM 1 O WAT 1 8.447 18.490 21.686 1.00 0.00
> > > ATOM 2 H1 WAT 1 8.923 18.731 20.892 1.00 0.00
> > > ATOM 3 H2 WAT 1 9.105 18.526 22.380 1.00 0.00
> > >
> > > $ sleap
> > > [gtkleap]$ source leaprc.amoeba
> > > [gtkleap]$ loadoff amoeba_wat.off
> > > [gtkleap]$ z=loadpdb water.pdb
> > > [gtkleap]$ saveamoebaparm z z.top z.xyz
> > > Program received signal SIGSEGV, Segmentation fault.
> >
> > Works OK for me using gcc 4.4.0 on MacOSX 10.5. I have an updated source
> > code, however. It would be great if someone else with a "raw" 1.3 files
> > could indicate whether or not they also see the error.
> >
> > ....dac
> >
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
--
Neil Henson Tel: 505-667-7795
Technical Staff Member Fax: 505-665-3909
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Received on Tue Feb 16 2010 - 08:30:02 PST
