Hello,
On Fri, Jan 29, 2010 at 11:19 PM, ben rodriguez <bramber.live.com> wrote:
>
> Im compiling AT 1.3 on ubuntu , using ./configure -nobintraj intel, on intel 11 compilers.
>
> It errors here:
>
> make[1]: Entering directory `/usr/local/amber10/src/nss'
You are installing AT 1.3 in an amber10 directory. I'm assuming you
already have amber10. AmberTools 1.3 unpacks into the amber11
directory on purpose. It is not compatible with amber10
installations. To install AT 1.3 for use with amber10, install
AmberTools 1.3 in the amber11 directory. Then, unpack amber10 and
AmberTools 1.2 into the amber10 directory. Install AmberTools 1.2
there and then amber10 there.
Then, set up AMBERHOME to point to your amber11 directory containing
ambertools 1.3 (since only ambertools executables make use of that
environment variable). I would also recommend that you allow for
bintraj, as netcdf trajectories are higher precision, much faster to
write, much faster to analyze in ptraj, and overall better than text
trajectory files (they also load instantly in VMD if you use the "load
in the background" option).
> /usr/local/amber10/bin/nab -o matgen matgen.o libsym.a
> /usr/local/amber10/lib/libnab.a(sff.o): In function `mm_options':
> sff.c:(.text+0x16e9): undefined reference to `mmolex'
> cc failed!
>
> If anyone has any ideas, let me know.
>
Good luck!
Jason
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri Jan 29 2010 - 20:30:37 PST
