Re: [AMBER] Error in parallel compiling of Amber

From: case <case.biomaps.rutgers.edu>
Date: Wed, 20 Jan 2010 00:06:18 -0500

On Wed, Jan 20, 2010, nicee.srivastava.imtech.res.in wrote:

> # AMBER Makefile configuration for compiler/architecture: ifort_ia64
> # Generated via command: ./configure -mpi ifort_ia64

A bare "-mpi" flag is only appropriate if you have a "native" mpi library
available, so the libmpi.a is location searched by default, usually
/usr/lib.


>
> By giving the commands....which mpif90 and mpif90 -show, i got following result:
>
> /usr/bin/which: no mpif in
> (/opt/intel/cc/10.1.015/bin:/opt/intel/fc/10.1.015/bin:/usr/lib/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/nicee/bin:/home/nicee/amber9/exe:/home/nicee:/bin:/include:home/nicee/dejavu_linux/exe:)
>
> /usr/bin/which: no 90 in
> (/opt/intel/cc/10.1.015/bin:/opt/intel/fc/10.1.015/bin:/usr/lib/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/nicee/bin:/home/nicee/amber9/exe:/home/nicee:/bin:/include:home/nicee/dejavu_linux/exe:)

Looks like you mistyped the command; you probably typed "which mpif 90"
instead of "which mpif90".

>
> As such I believe there is some problem with the mpi library....will I have to
> install mpi library first?

You almost certainly need to install an mpi library yourself. The system
is trying to soldier ahead which whatever it is that is in /usr/local/lib,
but that was probably compiled with a differnt compiler.

....dac


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Received on Tue Jan 19 2010 - 21:30:02 PST
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