Bison is present and i directed yacc to bison on the makefile for
ncgen...
On Tue, 2010-01-12 at 13:08 -0500, Jason Swails wrote:
> Hello,
>
> Install the packages bison or byacc to your system. If you are using
> Ubuntu, a simple "apt-get install byacc" or "apt-get install bison"
> should fix the problem.
>
> Good luck!
> Jason
>
> On Tue, Jan 12, 2010 at 1:01 PM, Cihan Aydin <cihan.aydin.umassmed.edu> wrote:
> > Greetings community,
> >
> > I was trying to compile parallel AT 1.3 w/intel compilers and bintraj
> > support but I got the following error...
> >
> > cd ncgen && make
> > make[6]: Entering directory
> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils/ncgen'
> > mpicc -o ncmpigen -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE main.o
> > load.o ncgentab.o escapes.o getfill.o init.o genlib.o -L../../../src/lib
> > -lpnetcdf
> > /home/aydinc/MicroEnv/intel-11.1.064/lib/intel64/libimf.so: warning:
> > warning: feupdateenv is not implemented and will always fail
> > main.o: In function `main':
> > main.c:(.text+0x54b): undefined reference to `yyin'
> > main.c:(.text+0x550): undefined reference to `yyparse'
> > init.o: In function `init_netcdf':
> > init.c:(.text+0x2): undefined reference to `clearout'
> > make[6]: *** [ncmpigen] Error 1
> > make[6]: Leaving directory
> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils/ncgen'
> > make[5]: *** [ncmpigen] Error 2
> > make[5]: Leaving directory
> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils'
> > make[4]: *** [all] Error 2
> > make[4]: Leaving directory
> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src'
> > make[3]: *** [subdir_target] Error 1
> > make[3]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/pnetcdf'
> > make[2]: *** [src/lib/all] Error 2
> > make[2]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/pnetcdf'
> > make[1]: *** [../pnetcdf/lib/libpnetcdf.a] Error 2
> > make[1]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/ptraj'
> > make: *** [parallel] Error 2
> >
> > Following this error, I made the compilation without bintraj support and
> > everything was OK.
> >
> > What may be the cause of the problem, in case I would like to use binary
> > trajectories?
> >
> > Thank you,
> >
> > Cihan
> >
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
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Received on Tue Jan 12 2010 - 10:30:05 PST
