Greetings community,
I was trying to compile parallel AT 1.3 w/intel compilers and bintraj
support but I got the following error...
cd ncgen && make
make[6]: Entering directory
`/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils/ncgen'
mpicc -o ncmpigen -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE main.o
load.o ncgentab.o escapes.o getfill.o init.o genlib.o -L../../../src/lib
-lpnetcdf
/home/aydinc/MicroEnv/intel-11.1.064/lib/intel64/libimf.so: warning:
warning: feupdateenv is not implemented and will always fail
main.o: In function `main':
main.c:(.text+0x54b): undefined reference to `yyin'
main.c:(.text+0x550): undefined reference to `yyparse'
init.o: In function `init_netcdf':
init.c:(.text+0x2): undefined reference to `clearout'
make[6]: *** [ncmpigen] Error 1
make[6]: Leaving directory
`/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils/ncgen'
make[5]: *** [ncmpigen] Error 2
make[5]: Leaving directory
`/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils'
make[4]: *** [all] Error 2
make[4]: Leaving directory
`/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src'
make[3]: *** [subdir_target] Error 1
make[3]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/pnetcdf'
make[2]: *** [src/lib/all] Error 2
make[2]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/pnetcdf'
make[1]: *** [../pnetcdf/lib/libpnetcdf.a] Error 2
make[1]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/ptraj'
make: *** [parallel] Error 2
Following this error, I made the compilation without bintraj support and
everything was OK.
What may be the cause of the problem, in case I would like to use binary
trajectories?
Thank you,
Cihan
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Received on Tue Jan 12 2010 - 10:30:02 PST
