Hi,
did all the Amber tests pass on your machine? Especially the ones in
parallel? It looks like this is a setup problem, which is hard to diagnose
remotely. Also, check if your runs produced output, often the real error
message is found in mdout after a segfault.
Kind Regards,
Thomas
On Mon, January 11, 2010 4:41 am, mani grover wrote:
> while minimization i am getting filloeing error
>
> [nobel2:10165] *** Process received signal ***
> [nobel2:10165] Signal: Segmentation fault (11)
> [nobel2:10165] Signal code: Address not mapped (1)
> [nobel2:10165] Failing at address: 0x1098294ac
> [nobel2:10165] [ 0] /lib64/libc.so.6 [0x3d378301b0]
> [nobel2:10165] [ 1] sander.MPI(rgroup_+0x1078) [0x515314]
> [nobel2:10165] [ 2] sander.MPI(mdread2_+0xa575) [0x4c6104]
> [nobel2:10165] [ 3] sander.MPI(sander_+0xb6b) [0x49ec57]
> [nobel2:10165] [ 4] sander.MPI(MAIN__+0x1264) [0x499ee8]
> [nobel2:10165] [ 5] sander.MPI(main+0xe) [0x629c5e]
> [nobel2:10165] [ 6] /lib64/libc.so.6(__libc_start_main+0xf4)
> [0x3d3781d8b4]
> [nobel2:10165] [ 7] sander.MPI [0x41c249]
> [nobel2:10165] *** End of error message ***
> mpiexec noticed that job rank 0 with PID 10165 on node nobel2 exited on
> signal 11 (Segmentation fault).
> ~
> please let me know how to remove it
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
Dr. Thomas Steinbrecher
BioMaps Institute
Rutgers University
610 Taylor Rd.
Piscataway, NJ 08854
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Received on Mon Jan 11 2010 - 05:00:02 PST
