PBSA outputs atomic surface areas when npbverb in set to 1. However, you
need to post-process the output file to retrieve the hydrophobic atomic
surface areas only.
All the best,
Ray
==========================================
Ray Luo, Ph.D.
Associate Professor in Computational
Biochemistry and Molecular Biophysics
Dept of Molecular Biology and Biochemistry
Dept of Biomedical Engineering
University of California, Irvine, CA 92697-3900
Email: rluo.uci.edu Phones: (949) 824-9528, 9562
Web: http://rayl0.bio.uci.edu/rayl/
==========================================
qiaoyan wrote:
> hello everyone:
> I want to compute the hyphobic surface area, does amber have the ability to do the computation? thank you!
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Received on Thu Jan 07 2010 - 19:30:03 PST
